Bookkeeping Services for BigCommerce Sellers

To run a successful BigCommerce store, focus on growth, customers, and products instead of complicated spreadsheets. Dealing with multiple payment methods, regular refunds, and fast-moving inventory can overwhelm standard bookkeeping. 

Our team, led by a CPA and IRS Enrolled Agent, provides expert bookkeeping for your BigCommerce store. We make sure your records are accurate, tax-ready, and reflect how your store operates. This way, you can concentrate on scaling your business instead of worrying about numbers.

2000 +

Happy Clients

12 +

Years in industry

150 +

Strong team

WHAT WE FIX

BigCommerce Bookkeeping Challenges We Solve

Handling bookkeeping for a BigCommerce store is different from managing a traditional business. With multiple payment gateways, regular refunds, changing inventory, and varying tax rules, many store owners find themselves overwhelmed with spreadsheets instead of focusing on growth. Here's how we help.

Problem: Cash flow and true profit are invisible without a clear financial picture.
Fix: We deliver clean reporting, so you finally know what you're actually making.

Problem: Hours go into spreadsheets instead of growing your store.
Fix: We automate the reconciliation work, so your time goes back to the business.

Problem: Returns and disputes are hard to trace back to the original sale.
Fix: We map every refund and chargeback to its order, so nothing gets lost.

Problem: Inaccurate inventory tracking means your cost of goods sold is wrong.
Fix: We track inventory accurately, so your COGS reflects reality.

Problem: Multi-state tax rules are confusing and easy to get wrong.
Fix: We keep you compliant and audit-ready across every state you sell in.

Problem: Stripe, PayPal, and other processors never quite match your books.
Fix: We reconcile every gateway against your bank activity, cleanly.

WHAT WE HANDLE

BigCommerce Bookkeeping Services That Cover Everything You Need

BigCommerce bookkeeping is different from traditional bookkeeping. It involves reconciling payment gateways, tracking inventory across different sales channels, and ensuring you comply with tax laws in various states. Our team, which focuses on BigCommerce, takes care of all these tasks for you.

HOW IT WORKS

What Working With Our BigCommerce Accountants Looks Like

BigCommerce Accounting Assessment

We start by reviewing your store's setup, payment gateways, inventory tracking, multi-channel sales, and current reconciliation process, to see where the numbers stop lining up. We surface what's broken before it costs you more.

Reconciliation & System Setup

We tie every order to your bank activity and general ledger, set up SKU-level COGS tracking, and integrate your BigCommerce store directly with QuickBooks or Xero, so entries land in the right accounts automatically.

Tax & Multi-Channel Cleanup

We map your sales tax obligations across every state you sell in, and if you sell across storefront, POS, or marketplaces, we separate each channel into its own clean set of numbers.

Real-Time Reporting & Insights

You get up-to-date dashboards on cash flow, margins, and channel performance, plus a dedicated point of contact, so you always know your numbers and can plan your next move with confidence.

Reviews

Here's What Happens When You Work With Us!

5.0
From 16 reviews
Patrick Hensley
Head of Product at AtlasPeak Technologies
reviewed on 27/3/2026
Patrick Hensley
Hiring a full-time CFO wasn’t practical for us, but we still needed high-level financial guidance. Ledger Labs’ fractional CFO service gave us exactly that. They helped us set budgets, improve cash flow management, and prepare for investor discussions.
Budget
5.00
Schedule
5.00
Quality
5.00
Communication
5.00
adam rowe
CEO at Sakscom
reviewed on 2/8/2024
Attention to detail
Their attention to detail and commitment to accuracy have significantly improved our financial management. The team is professional, responsive, and always ready to assist with any queries. Their expertise has streamlined our bookkeeping processes, making it easier for us to focus on our core business operations. We highly recommend Ledger Labs to anyone in need of reliable and efficient bookkeeping services.
Budget
5.00
Schedule
5.00
Quality
5.00
Communication
5.00
john holland
Manager at PlusSend
reviewed on 23/7/2024
Timely and Reliable Delivery

Ledger Labs consistently delivered high-quality work on time, demonstrating their reliability and commitment to meeting deadlines. Their punctuality in delivering reports and updates helped maintain smooth business operations and strategic planning. Their ability to adapt to changing needs and provide flexible solutions was a standout feature. Whether it was adjusting the scope of work or refining financial processes, Ledger Labs showcased a strong commitment to meeting the evolving needs of the business.

Budget
5.00
Schedule
5.00
Quality
5.00
Communication
5.00
Reviews (28)
5.0
Trevor James
May 08
We contacted Ledger Labs when our QuickBooks records became difficult to manage internally. There were duplicate entries, unreconciled transactions, and several months of pending bookkeeping work. Their team handled the cleanup process professionally and explained every correction clearly. After the cleanup, they also helped us establish a monthly bookkeeping workflow that made reporting much more organized.
Jason Carter
Apr 25
Ledger Labs has been a reliable accounting partner for our business. Their team is responsive, organized, and always delivers work on time. Highly recommended for startups and growing companies.
Gregory Walsh
Apr 04
We run a mid-sized Shopify store, and our books were always a mess, especially with payouts and fees. Ledger Labs cleaned everything up, and now our monthly reports actually make sense. It’s much easier to see where we’re making money and where we’re not.

Team You Can Count On

Gary Jain

Gary Jain

CFO | IRS Enrolled Agent

Gary started Ledger Labs in 2014 and has helped over 2,000 ecommerce businesses improve their finances. He focuses on CFO services, setting up ERP systems such as NetSuite, Odoo, and QuickBooks, and automating financial processes for growing online brands.

Allison Rinehimer Operations Manager

Allison Rinehimer

Operations Manager

Allison is a Certified Public Accountant (CPA) and a member of the AICPA. She oversees operations at Ledger Labs, ensuring accurate, compliant financials for hundreds of clients. With experience in both public and private accounting, she builds scalable systems that support fast-growing ecommerce businesses.

Matt Hidalgo Accountant

Matt Hidalgo

Accountant

Matt brings 7+ years of accounting experience across ecommerce, SaaS, and technology. He specializes in financial reporting, month-end close management, and ERP implementations (including NetSuite transitions). Matt ensures our clients get accurate, timely financials they can rely on for growth decisions.

What Makes Our BigCommerce Bookkeeping Different

Many payment options, selling on multiple platforms, and fast-moving inventory make BigCommerce complex. Most bookkeepers can’t handle this level of complexity, but we can.

FeatureLedger Labs’ Bookkeeping Services for BigCommerceOther Services
Order to GL ReconciliationEvery BigCommerce order batch ties back to bank activity and the general ledger. Sales, discounts, shipping income, taxes, and fees reconcile to platform reports with a clear audit trail.Month end bulk entries. Discounts, fees, and shipping bundled together. Variances show up with no reliable path back to individual orders.
Sales and Revenue TrackingRevenue segmented by product group, channel, and promotion. Gross, returns, and net clearly separated so trends are easy to read.Single revenue line. Returns and promotions distort totals. Trend analysis requires manual spreadsheets.
Payment Gateway ReconciliationPayouts from Stripe, PayPal, Amazon Pay, and others matched to orders. Fees, refunds, and chargebacks posted to the correct accounts. Ending balances agree to statements.Deposits booked as income on receipt. Fees estimated later. Suspense accounts grow and require cleanup during close.
Refunds, Discounts, and ChargebacksRefunds mapped to revenue reversals, taxes adjusted, and COGS reversed when applicable. Chargebacks posted with related fees and linked to the original order.Refunds recorded as negative sales only. Tax and COGS reversals missed. Chargebacks treated as generic bank expense.
Inventory and COGS AccuracySKU level costs tracked with your chosen method, such as FIFO or weighted average. Receipts, adjustments, and write offs tie to sub ledgers and the GL.COGS based on rough percentages. Unit costs drift. Inventory and GL do not match at close.
Expense and Vendor ManagementVendor bills captured, coded, and matched to purchase orders or receipts. Recurring expenses reviewed so cash outflows stay predictable.Bills entered without matching or coding standards. Recurring costs fluctuate. Forecasting remains unclear.
Sales Tax ComplianceSales tax mapped to liability accounts. Filing calendars tracked. Reports prepared to match agency filings and portal totals.Sales tax held in revenue or posted unevenly. Filing amounts differ from collected amounts. Notices and penalties become common.
Financial Reports and InsightsClean P and L, balance sheet, and cash flow with supporting schedules. Views for GMV, net sales, returns, discounts, AOV, and gross margin by channel.Generic statements with limited detail. Drivers of change are not obvious. Decisions rely on guesswork.
Cash Flow VisibilityCollections, payouts, inventory buys, and operating spend shown by week and month. Owners can see when cash tightens and why.Cash described after the fact. No clear timing on payouts or inventory purchases. Surprises near payroll or tax dates.
Multi Channel MappingStorefront, POS, and marketplaces tracked separately. Each channel posts to its own revenue, fee, and tax lines for clear performance views.All channels combined into one revenue account. Fees mixed in. Channel performance cannot be isolated.
Multi Currency and FXForeign currency sales and payouts translated with recorded rates. FX gains and losses posted clearly so margins remain readable.Foreign activity booked at deposit value only. FX differences hidden in miscellaneous expense.
Month End Close ChecklistBank, gateways, inventory, receivables, payables, and tax reconciled. Source reports attached. Reviews logged for continuity and audits.Ad hoc close using spreadsheets. Limited support for entries. Rework increases at year end.
Technology and IntegrationsDirect work with BigCommerce plus accounting tools like QuickBooks and Xero, and processors like Stripe and PayPal. Entries land in the right accounts on first pass.CSV imports without reconciliation steps. Data posted to catch all accounts. Fixes required each month.
Fraud Checks and Error ReductionHigh volume reviews flag duplicate charges, unusual refunds, and mismatched payouts. Issues are raised early with clear next steps.Irregular activity noticed late. Corrections handled after the month is closed.
Payroll and Team PaymentsContractors and staff recorded correctly. Payroll summaries tie to bank and GL. Employer taxes and benefits posted to the right cost centers.Lump sum payroll and contractor entries. Taxes and benefits posted later. Cost centers lack accuracy.
Flat Monthly PricingOne predictable monthly fee covers bookkeeping for BigCommerce, reconciliations, close support, and report delivery. No surprise add ons.Hourly billing and per task adders. Costs increase when you ask for help.

Accounting Software We Work In

Our Testimonials

Hear from More Business Owners Who Were in Your Exact Position

Find out what our customers are saying about our services.

Between Stripe, PayPal, and Amazon Pay, I never knew which payout matched which orders; every month was a guessing game. Ledger Labs reconciled every gateway down to the fee. For the first time, my books actually explain themselves instead of leaving me confused.

Emeric Vasilenko Founder

I was pricing products based on a rough estimate because I never actually knew our real cost of goods. Ledger Labs set up SKU-level COGS tracking, and it turned out our margins were thinner than I thought on half our catalog. I repriced immediately, and it made a real difference.

Odalys Ferreira Owner

We sell through our storefront, a marketplace, and in-person POS, and everything was lumped into one confusing revenue line. Ledger Labs separated each channel into its own clean numbers. Now I can actually see which channel is worth investing more in.

Thaddeus Okonkwo-Reyes CEO

Multi-state sales tax was a maze I didn't have time to figure out, and I was terrified of getting a notice. Ledger Labs mapped out exactly where we owed and got us compliant before it became a real problem. That peace of mind alone was worth it.

Genevieve Almeida Co-Founder
FAQ

BigCommerce Bookkeeping Questions We Get A Lot

1. What does bookkeeping for BigCommerce sellers actually involve?
It means reconciling every order to your bank and payment gateways, tracking inventory and COGS at the SKU level, managing sales tax across states, and delivering financial reports you can act on. It’s different from generic bookkeeping because BigCommerce’s transaction data, discounts, refunds, multi-channel sales, and gateway fees don’t map cleanly to a simple bank deposit.
Ecommerce accounting is different from regular bookkeeping. It involves multiple payment gateways, frequent refunds, and fast-moving inventory, which require special attention. A general approach can hide your actual profits and lead to incorrect sales tax filings. Accounting that specializes in BigCommerce sorts through these details at the transaction level.
Yes, we match your payouts from Stripe, PayPal, Amazon Pay, and other processors to your actual orders. This includes fees, refunds, and chargebacks posted to the correct accounts. As a result, your bank balance and your records will finally match.
Yes, we identify your sales tax responsibilities in every state where you need to pay. We help you keep your filing deadlines on track and create reports based on what you actually collected. Many BigCommerce sellers come to us for help with multi-state sales tax issues. See our full sales tax services for more details.
Yes, we use SKU-level costing (FIFO or weighted average), so your cost of goods sold reflects real inventory movement, not a rough estimate. This is usually where sellers discover their real margins are different from what they assumed.
Yes, if you also sell through a marketplace, POS, or other storefronts, we separate each channel into its own clean numbers while still giving you one consolidated view, so you can see which channels actually perform. See our full ecommerce accounting services for the multi-channel picture.
Yes. We set up clean integrations with QuickBooks and Xero, so order and payout data flows in automatically, no manual CSV imports or cleanup at month-end.
Yes. We run high-volume transaction reviews that flag duplicate charges, unusual refund patterns, and mismatched payouts early, with clear next steps, instead of discovering the loss at close.
It depends on your order volume, number of sales channels, and whether you need payroll handled too, so published “average” figures rarely match what you’ll actually pay. Rather than bill hourly, we scope your needs and quote a clear flat monthly fee.

See What Happens When You Work With Us

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