Bookkeeping Services for Amazon Sellers

Running an Amazon business is fraught with complexity: multiple marketplaces, FBA/FBM logistics, commission and fee deductions, inventory movements, reimbursements, returns, promotional campaigns, and advertising.

You don’t want your books to be another nightmare.

At Ledger Labs, we specialize in Bookkeeping for Amazon Sellers, meaning we speak your language, understand your challenges, and deliver clarity.

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What Makes Ledger Labs the Best Amazon Bookkeeping Partner?

What Are the Common Bookkeeping Challenges Amazon Sellers Face (And How Ledger Labs Solves Them?)

Running an Amazon business is exciting, but managing its financials can quickly become overwhelming. Between FBA reimbursements, multi-channel sales, fluctuating fees, and frequent inventory updates, many sellers find themselves lost in a maze of numbers.

At Ledger Labs, we understand that Amazon bookkeeping isn’t just about recording transactions; it’s about making sense of them. Our specialized team ensures your books are accurate, automated, and aligned with your business goals. By combining marketplace expertise with modern technology, we help you save time, uncover hidden profits, and build a business that scales confidently.

With ever-changing fee structures, marketplace policies, and compliance requirements, even the most organized sellers can struggle to stay on top of their finances. That’s where we come in, turning complex data into clear insights so you can focus on growth, not spreadsheets.

Our clients choose Ledger Labs because we go beyond balancing books, we empower you with financial clarity, smart reporting, and Amazon-specific strategies to optimize your operations and profitability.

Most of Our Amazon Clients Approach Us With These Problems:

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The Benefit of Partnering With Amazon Bookkeeping Experts

Managing your Amazon store’s finances manually? Waiting for spreadsheets to balance? That’s old-school. Amazon bookkeeping demands precision, automation, and insight — not just record-keeping. At Ledger Labs, we bring technology-driven solutions that sync directly with your Amazon Seller Central, track every transaction in real time, and deliver clear financial visibility at your fingertips.

Unlike generic accountants, we don’t just post numbers — we decode them. We analyze your FBA costs, advertising spend, reimbursements, and sales performance to show you where you’re earning and where you’re leaking. With expert oversight and eCommerce-focused reporting, you get more than clean books — you gain control, foresight, and a strategy for profitable scaling.

Generic bookkeeping misses the nuances of Amazon’s ecosystem — from fluctuating referral fees to storage adjustments and promotional credits. Our team understands every aspect of Amazon’s financial structure, helping you capture true profitability and maintain accurate reports aligned with each marketplace.

We go beyond balancing ledgers. Ledger Labs builds financial clarity that fuels growth — providing insights into top-performing SKUs, profit margins, and ad ROI. With data-driven dashboards, you can plan inventory, manage cash flow, and expand strategically across new regions or categories.

With Ledger Labs, you don’t just get a bookkeeper — you get an Amazon partner. Our experts proactively identify issues before they cost you money, keep your reports audit-ready, and deliver monthly reviews that keep your financial health on track. You’ll always know where your business stands and what to do next.

What Does an Amazon Bookkeeping Partner Do?

As Amazon sellers scale, managing finances becomes increasingly complex — every sale, return, promotion, and FBA adjustment affects your bottom line. Without proper bookkeeping, it’s easy to lose track of actual profits, overpay fees, miss reimbursements, or make decisions based on inaccurate numbers.

That’s where Ledger Labs comes in. We’re not just bookkeepers — we’re your Amazon accounting partners. Our experts specialize in eCommerce accounting and Amazon marketplace operations, helping you transform disorganized financial data into actionable business insights. By outsourcing your bookkeeping to Ledger Labs, you gain a team that understands the intricacies of Amazon settlements, FBA inventory, and fee structures — all while ensuring your books are clean, compliant, and ready for tax season.

Our tailored Amazon bookkeeping solutions go beyond basic transaction recording. We help you understand where your money is going, identify profit-draining patterns, and optimize for sustainable growth. Whether you’re running a single-brand storefront or a multi-market empire, our systems and expertise adapt to your business size, volume, and regions.

Key Responsibilities of an Amazon Bookkeeping Partner

  1. Transaction Reconciliation & Settlement Accuracy:
    We ensure every Amazon settlement is accurately mapped — from product sales and returns to FBA fees, commissions, and advertising costs. Our detailed reconciliation process keeps your accounts balanced, ensuring no revenue leaks or hidden charges go unnoticed.

  2. FBA Inventory & COGS Management:
    Inventory is the heartbeat of your Amazon business. Ledger Labs tracks your FBA stock movement, inbound shipments, removals, and write-offs to maintain accurate inventory valuation. We calculate your true Cost of Goods Sold (COGS), helping you understand real profitability at SKU and category levels.

  3. Reimbursement Recovery & Dispute Handling:
    Amazon often owes sellers money for damaged, lost, or overcharged inventory. Our team reviews reports, identifies missing reimbursements, and assists in claim submissions to recover every dollar rightfully yours.

Why Outsourcing Your Amazon Bookkeeping to Ledger Labs Is the Smart Choice

Outsourcing to Ledger Labs means more than cost savings — it means financial clarity, operational efficiency, and strategic insight. Our team eliminates the headache of manual data entry, confusing statements, and complex spreadsheets. Instead, you get real-time dashboards, reconciled accounts, and accurate financial intelligence that empowers smart decision-making.

We integrate seamlessly with your existing tools — QuickBooks, Xero, A2X, or custom setups — automating data flow and ensuring error-free records. And unlike generic accounting firms, we don’t just maintain books — we grow with you, acting as long-term partners invested in your success.

Whether you’re an emerging Amazon seller or a seasoned brand scaling globally, Ledger Labs gives you the structure, strategy, and support to stay financially sharp, compliant, and profitable — every single month.

Our Testimonials

What Our Customers Say

Find out what our customers are saying about our products.

My main problem always has been to know my accurate profits & this is precisely what Ledger Labs helped me with. They went through my entire supply chain costs, my monthly operational expenses, and COGS and got me the correct costing of my goods and the cost of running the business. Now I know how much I need to sell & at what price I should sell it to be profitable.

Ariel Robinson CEO & Founder

Since working with Ledger labs, our bookkeeping and Controller processes have been streamlined. The routine accounting tasks are managed on a predictable schedule, and checklists are used to ensure that all required documents are processed within the proper deadlines. We have improved the accuracy and timeliness of our financial statements and other crucial

Patrik Nichols CFO

We have a unique business, and almost all the accounting firms we have engaged so far have been unable to get a hold of our business. But Ledger Labs really took the bull by its horn. They understood our business better than us & created a very customized process & systems to streamline our accounting department. We now have detailed step-by-step process documentation, checklists & schedule of reports.

Amanda Fludd CEO

Ledger Labs found $18K in missed deductions that our old accountant completely missed—same books, same receipts, totally different results. That’s when I knew we were finally working with pros. Since then, they’ve helped us restructure expenses and make tax planning part of the daily flow, not just something we scramble on last minute.

Michael Smith CFO

Gary—yes, the founder—took the time to really understand our business and where we were struggling. Within a few weeks, our books were clean, our cash flow was clear, and we were spending way less time managing it all. You can tell he genuinely cares, and that energy runs through the whole team

Nicole Allen Founder & CEO

Why Your Amazon Business Needs a Dedicated Bookkeeping Partner Like Ledger Labs

Managing an Amazon business isn’t just about selling great products — it’s about understanding your numbers. From fluctuating FBA fees and changing tax rules to inventory adjustments and international marketplace settlements, keeping your books accurate can become a full-time job. Many sellers spend hours each week trying to decode reports, reconcile accounts, and fix errors — time that could be invested in scaling operations or building customer relationships.

That’s where Ledger Labs steps in. Our dedicated Amazon bookkeeping services are designed to take the complexity out of your finances. We go beyond basic accounting tasks, helping you interpret your financial data, identify hidden opportunities, and maintain compliance across every region you sell in. With a team that specializes in Amazon marketplace dynamics, you gain clarity, control, and confidence in every decision you make.

  1. Time & Resource Efficiency
    Running reports, matching settlements, and managing spreadsheets can consume countless hours. Our automated systems connect directly with Amazon Seller Central to capture every transaction accurately. By outsourcing bookkeeping to Ledger Labs, you save valuable time, reduce manual errors, and free your internal team to focus on growth and product strategy, not bookkeeping bottlenecks.

  2. Real-Time Financial Visibility
    Amazon businesses move fast — and you can’t afford to rely on outdated numbers. We deliver real-time financial dashboards and monthly insights that reflect your store’s true performance. You’ll see how each SKU, campaign, and marketplace contributes to overall revenue, helping you make informed decisions backed by accurate data.

  3. Accurate Fee & Reimbursement Management
    Amazon’s fee structure can be complex — from referral and FBA fees to advertising charges and storage costs. Ledger Labs ensures every deduction is properly recorded, reconciled, and verified. We also track unclaimed reimbursements for lost or damaged inventory, recovering money that often goes unnoticed by generic bookkeeping teams.

  4. Inventory Control & Profitability Insights
    Poor inventory accounting leads to inaccurate COGS and distorted profit margins. Our team monitors FBA stock levels, inbound shipments, removals, and write-offs, providing detailed inventory valuation and turnover reports. This level of insight helps you manage cash flow effectively, avoid overstocking, and reinvest in high-performing SKUs.

  5. Global Compliance & Tax-Ready Reporting
    Expanding across marketplaces like Amazon US, UK, and EU? We consolidate multi-region data into one clean, tax-ready set of books. From sales tax tracking to international compliance, our Amazon-focused accountants keep you audit-proof and penalty-free, giving you peace of mind during every reporting cycle.

With Ledger Labs, you don’t just outsource your bookkeeping — you gain a financial partner invested in your Amazon journey. We bring order to complexity, transform raw data into actionable insights, and help you scale your store profitably with confidence.

FeatureLedger Labs’ Bookkeeping Services for Amazon SellersOther Services
Settlement to GL ReconciliationEach Amazon settlement mapped to the general ledger. Product sales, refunds, gift wrap, shipping credits, fees, and withholdings tie to Seller Central reports and bank activity.Monthly bulk entries from deposits only. Many lines grouped together. Variances have no clear path back to settlements.
FBA Inventory TrackingInbound, transfers, removals, disposals, and returns recorded. SKU level valuation maintained. COGS posted from reliable movement data so margins remain readable.COGS based on periodic percentages. Inventory and GL drift apart. Write offs handled late.
Fees and Commissions MappingReferral, FBA, storage, long term, advertising, and shipping fees posted to distinct accounts. Clear view of cost drivers by SKU and marketplace.Fees lumped into one expense line. Hard to explain margin swings. Reviews take hours.
Reimbursements and ClaimsDamaged, lost, and overcharged items reviewed. Missing reimbursements flagged. Claims logged and linked to the original transactions.Reimbursements recorded only when the deposit appears. Missed items stay unresolved.
Returns and Refunds ControlReturns tied to the sale, tax, and COGS reversal when applicable. Net revenue reflects reality. Chargebacks and SAFE T outcomes tracked.Refunds posted as negative sales only. Taxes and COGS reversals missed. Net figures distorted.
Multi Marketplace ConsolidationUS, UK, EU, CA, and other regions consolidated with consistent charts of accounts. Marketplace views remain available for performance reviews.Separate files per region with inconsistent coding. Roll ups require manual work each month.
Revenue Recognition and COGSRevenue recorded by SKU, variation, and marketplace. COGS recognized from movement and landed costs when available. Profit by product stays dependable.Revenue and COGS posted in bulk. Product level margins are unclear or misleading.
Advertising Cost AlignmentAmazon Ads and coupons mapped to the correct campaigns and SKUs where possible. Period costs tie to settlement data and invoices.Ad spend posted to one bucket. No link to SKUs. Hard to judge promotion impact.
Tax Ready FinancialsSales tax or VAT liabilities recorded correctly. Month end packs include P and L, balance sheet, cash flow, and schedules that support filings.Tax held in revenue or posted loosely. Filing numbers do not match reports. Notices appear later.
Cash Flow and Payout TimingPayout cadence, reserves, and withholdings explained. Forecasts show when cash will arrive and how much will clear after fees.Payouts treated as income. No view of timing or holds. Cash surprises near payroll or inventory buys.
A2X, QuickBooks, and Xero IntegrationClean mappings and account structures set up. Entries land in the right accounts on first pass. Exceptions reviewed and corrected.CSV imports without controls. Data posted to catch all accounts. Cleanup required at close.
SKU and Marketplace ReportingReports show net sales, returns, fees, contribution margin, and trends by SKU and region. Clear view of what moved margins and why.Generic statements with one revenue line. No SKU level clarity. Planning relies on guesswork.
Month End Close and Audit TrailChecklist covers bank, settlements, inventory, payables, and tax. Source files attached. Reviews logged so handoffs remain smooth.Ad hoc close in spreadsheets. Limited backup for entries. Rework increases at year end.
Dedicated Account ManagerOne point of contact who knows your Amazon setup, flags issues early, and schedules reviews so owners have clear next steps.Ticket based queue. Rotating staff. Context gets lost between messages.
Flat Monthly PricingOne predictable monthly fee covers Amazon bookkeeping, reconciliations, close support, and reporting. No surprise add ons.Hourly billing and per task adders. Costs rise when you ask for help.
Get Ready-to-use Templates for Financial Statements